Bioconductor packages using CRAN archived packages

Checks on the 4 Bioconductor repositories which packages depend on a archived package.

Usage

bioc_cran_archived(which = "strong")

Arguments

which

a character vector listing the types of dependencies, a subset of c("Depends", "Imports", "LinkingTo", "Suggests", "Enhances"). Character string "all" is shorthand for that vector, character string "most" for the same vector without "Enhances", character string "strong" (default) for the first three elements of that vector.

Value

A data.frame with the name of the Bioconductor packages depending on archived packages (on Archived column) and the number of missing packages (n). NA if not able to collect the data.

See also

For CRAN's data source: tools::CRAN_package_db()

Examples

bca <- bioc_cran_archived()
#> Downloading and caching packages available on Bioconductor for this session.
#> Downloading and caching CRAN's packages database for this session.
head(bca)
#>      Package Archived n
#> 1 CAGEfightR     pryr 1
#> 2    CCPlotR   ggbump 1
#> 3       CSOA       qs 1
#> 4 ChromSCape       qs 1
#> 5   ClustIRR  blaster 1
#> 6       OHCA   HiCool 1